Publications

Peer-reviewed publications


30. Zanne A, K Abarenkov, M Afkhami, C Aguilar-Trigueros, S Bates, P Busby, N Christiansen, W Cornwell, T Crowther, H Flores-Moreno, D Foudas, R Gazis, D Hibbett, P Kennedy, D Lindner, D Maynard, A Milo, R Nilsson, J Powell, M Schildhouer, J Schilling, JM Bhatnagar, and K Treseder. In press. Fungal functional ecology: Bringing a trait-based approach to plant-associated fungi. Biological Reviews.

29. Averill C, JM Bhatnagar, MC Dietze, WD Pearse, and SN Kivlin. 2019. Global imprint of plant mycorrhizal association on plant nutrient use efficiency traits. PNAS: 201906655. DO1 10.1073/pnas.1906655116.

28. Vivelo A and JM Bhatnagar. 2019. Meta-analysis of fungal succession during plant litter decay. FEMS Microbiology Ecology 95: fiz145. DOI 10.1093/femsec/fiz145

27. Saifuddin M, D Segré, JM Bhatnagar, and AC Finzi. 2019. Microbial carbon use efficiency predicted from genome-scale metabolic models. Nature Communications 10:3568. DOI 10.1038/s41467-019-11488-z

26. Sorensen PO, JM Bhatnagar, L Christianson, Jorge Duran, T Fahey, MC Fisk, AC Finzi, PM Groffman, JL Morse, and PH Templer. 2019. Roots mediate the Effects of Snowpack Decline on Soil Bacteria, Fungi, and Nitrogen Cycling in a Northern Hardwood Forest. Frontiers in Microbiology 10:926. DOI 10.3389/fmicb.2019.00926

25. Averill C, L Cates, MC Dietze, and JM Bhatnagar. 2019. Spatial vs. temporal controls over soil fungal community similarity at continental and global scales. ISME Journal 13, 2082–2093. DOI:10.1038/s41396-019-0420-1

24. Zak D, P Pellitier, W Argiroff, B Castillo, T James, L Nave, C Averill, K Beidler, JM Bhatnagar, Blesh, Jennifer; A Classen, M Craig, C Fernandez, P Gundersen, R Johansen, R Koide, E Lilleskov, B Lindahl, K  Nadelhoffer, R Phillips, A Tunlid. 2019. Exploring the function of ectomycorrhizal fungi in soil organic matter dynamics. New Phytologist 223:33-39. DOI:10.1111/nph.15679

23. Bhatnagar JM, Sabat, G, and D Cullen. 2019. The foliar endphyte Phialocephala scopiformis DAOMC 229536 proteome when grown on wood as sole carbon source. Microbiology Resource Announcements 8:e01280-18. DOI: 10.1128/MRA.01280-18

22. Hori C, J Gaskell, D Cullen, G Sabat, P Stewart, K Lail, Y Peng, K Barry, I Grigoriev, A Kohler, L Fauchery, F Martin, CA Zeiner, and JM Bhatnagar. 2018. Multi-omic analyses of extensively decayed Pinus contorta reveal expression of diverse array of lignocellulose degrading enzymes. Applied and Environmental Microbiology 84 (20) e01133-18. DOI: 10.1128/AEM.01133-18.

21. Averill C, MC Dietze, JM Bhatnagar. 2018. Continental‐scale nitrogen pollution is shifting forest mycorrhizal associations and soil carbon stocks. Global Change Biology 00 :1–10. DOI: 10.1111/gcb.14368.

20. Bhatnagar JM, KG Peay, KK Treseder. 2018. Litter chemistry influences decomposition through activity of specific microbial functional guilds. Ecological Monographs 88: 429-444. DOI: 10.1002/ecm.1303.

19. Ramirez KS, CG Knight, M de Hollander, FQ Brearley, B Constantinides, A Cotton, S Creer, TW Crowther, J Davison, M Delgado-Baquerizo, E Dorrepaal, DR Elliott, G Fox, RI Griffiths, C Hale, K Hartman, A Houlden, DL Jones, EJ Krab, FT Maestre, KL McGuire, S Monteux, CH Orr, WH van der Putten, IS Roberts, DA Robinson, JD Rocca, J Rowntree, K Schlaeppi, M Shepherd, BK Singh, AL Straathof, JM Bhatnagar, C Thion, MGA van der Heijden, FT de Vries. 2017. Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology 113: 285-293. DOI: 10.1038/s41564-017-0062-x

18. Siletti C, CA Zeiner, and JM Bhatnagar. 2017. Distributions of fungal melanin across species and soil. Soil Biology and Biochemistry 113: 285-293. DOI: 10.1016/j.soilbio.2017.05.030

17. Rosenthal L, S Branco, J Chung, S Glassman, H-L Liao, KG Peay, DP Smith, JM Talbot, JW Taylor, E Vellinga, R Vilgalys, TD Bruns. 2017. Survey of athelioid corticoid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal. Mycologia: 1-13. DOI: 10.1080/00275514.2017.1281677

16. Peay KG, PG Kennedy, JM Talbot. 2016. Dimensions of biodiversity in the Earth mycobiome. Nature Reviews Microbiology 14: 434-447. DOI: 10.1038/nrmicro.2016.59

15. Sinsabaugh RL, BL Turner, JM Talbot, BG Waring, JS Powers, CR Kuske, DL Moorhead, JJ Folstad Shah. 2016. Stoichiometry of microbial carbon use efficiency in soils. Ecological monographs 86(2): 172-189. DOI: 10.1890/15-2110.1

14. Talbot JM, F. Martin, A. Kohler, B. Henrissat, KG Peay. 2015. Functional guild predicts the enzymatic role of fungi in litter and soil biogeochemistry. Soil Biology and Biochemistry 88: 441-456. DOI: 10.1016/j.soilbio.2015.05.006

13. Glassman, S, KG Peay, JM Talbot, DP Smith, Judy Chung, JT Taylor, R Vilgalys, TD Bruns. 2015. A continental view of pine-associated ectomycorrhizal spore banks: a quiescent functional guild with a strong biogeographic pattern. New Phytologist 205: 1619-1631. DOI: 10.1111/nph.13240

12. Liao H-L, Y Chen, TD Bruns, KG Peay, JW Taylor, S Branco, JM Talbot, and R Vilgalys. 2014. Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with Piloderma-Pinus symbiosis: improved methodologies for assessing gene expression in situ. Environmental Microbiology 16: 3730-3742. DOI: 10.1111/1462-2920.12619

11. Huggins JA, JM Talbot, M Gardes, and PG Kennedy. 2014. Unlocking the environmental keys to host specificity: differential tolerance of acidity and nitrate by Alnus-associated ectomycorrhizal fungi. Fungal Ecology 12: 53-61. DOI: 10.1016/j.funeco.2014.04.003

10. Talbot JM, TD Bruns, JW Taylor, DP Smith, S Branco, SI Glassman, S Erlandson, R Vilgalys, H-L Liao, ME Smith, and KG Peay. 2014. Endemism and functional convergence across the North American soil mycobiome. Proceedings of the National Academy of Sciences 111: 6341-6346. DOI: 10.1073/pnas.1402584111

9. Talbot JM, S Erlandson, D Smith, S Glassman, R Vilgalys, T Bruns, J Taylor, M Smith, KG Peay. 2013. Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition. Soil Biology and Biochemistry. 57: 282-291. DOI: 10.1016/j.soilbio.2012.10.004

8. Talbot JM, KK Treseder. 2012. Interactions between lignin, cellulose, and N drive litter chemistry-decay relationships. Ecology. 93: 345-354 (Featured on journal cover). DOI: 10.1890/11-0843.1

7. Todd-Brown KEO, FM Hopkins, SN Kivlin, JM Talbot, SD Allison. 2012. A framework for representing microbial decomposition in coupled climate models. Biogeochemistry 109: 19-33. DOI: 10.1007/s10533-011-9635-6

6. Talbot JM, DJ Yelle, JS Nowick, KK Treseder. 2012. Litter decay rates are determined by lignin chemistry. Biogeochemistry 108: 279-295. DOI: 10.1007/s10533-011-9599-6

5. Talbot JM, KK Treseder. 2010. Controls over mycorrhizal uptake of organic N. Pedobiologia 53: 169-179. DOI: 10.1016/j.pedobi.2009.12.001

4. Gallet-Budynek A, E Brzostek, VL Rodgers, JM Talbot, S Hyzy, AC Finzi. 2009. Intact amino acid uptake by northern hardwood and conifer trees. Oecologia 160: 129-138. DOI: 10.1007/s00442-009-1284-2

3. Talbot JM, SD Allison, KK Treseder. 2008. Decomposers in disguise: Mycorrhizal fungi as regulators of soil carbon dynamics in ecosystems under global change. Functional Ecology 22: 955-963. DOI: 10.1111/j.1365-2435.2008.01402.x

2. Talbot JM, AC Finzi. 2008. Differential effects of sugar maple, red oak, and hemlock tannins on carbon and nitrogen cycling in temperate forest soils. Oecologia 155: 583–592. DOI: 10.1007/s00442-007-0940-7

1. Talbot JM, KD Kroger, A Rago, MC Allen, and MA Charette. 2003. Nitrogen Flux and Speciation Through the Subterranean Estuary of Waquoit Bay, Massachusetts. Biol. Bull. 205: 244-245. DOI: 10.2307/1543276

Other publications


5. Talbot JM. 2017. “Fungal Communities and Climate Change”. The fungal community: its organization and role in the ecosystem. Boca Raton: CRC.

4. Søgaard Jørgensen, P, F Barraquand, V Bonhomme, TJ Curran, E Cieraad, T Ezard, L Gherardi, RA Hayes, T Poisot, R Salguero-Gómez, L DeSoto, B Swartz, JM Talbot, B Wee, N Zimmerman. 2015. Connecting people and ideas from around the world: global innovation platforms for next-generation ecology and beyond. Ecosphere 6: 1-11.

3. Talbot JM, KK Treseder. 2011. Dishing the dirt on carbon cycling. Nature Climate Change 1: 144-146.

2. Salguero-Gomez R, M Whiteside, JM Talbot. 2009. After “eco” comes “service”. Guest editorial in: Frontiers in Ecology and the Environment 7: 277-278.

1. Talbot JM, A Miller-Rushing. 2008. An era of opportunity for students. Guest editorial in: Frontiers in Ecology and the Environment 6: 59-59

Publications in prep/review


6. Bhatnagar JM, G Sabat, D Cullen. In review. Global climate changes will lead to regionally divergent trajectories for ectomycorrhizal communities in North American Pinaceae forests. bioRxiv

5. Steidinger B, JM Bhatnagar, R Vilgalys, J Taylor, T Bruns, KG Peay. In review. The foliar endophyte Phialocephala scopiformis DAOMC 229536 secretes enzymes supporting growth on wood as sole carbon source. bioRxiv

4. Hori C, J Gaskell, D Cullen, G Sabat, P Stewart, K Lail, Y Peng, K Barry, I Grigoriev, A Kohler, L Fauchery, F Martin, CA Zeiner, and JM Bhatnagar. In revision Multi-omic analyses of extensively decayed Pinus contorta reveal expression of diverse array of lignocellulose degrading enzymes.

3. Saifuddin M, D Segré, JM Bhatnagar, and AC Finzi. In revision. Bacterial carbon-use efficiency from genome specific metabolic models is phylogenetically structured and declines with genome size and GC content. Nature Microbiology.

2. Averill C*, L Cates§, MC Dietze, and JM Bhatnagar**. In revision. Spatial vs. temporal controls over soil fungal community similarity at continental and global scales. ISME Journal.

1. Zanne A, K Abarenkov, M Afkhami, C Aguilar-Trigueros, S Bates, P Busby, N Christiansen, W Cornwell, T Crowther, H Flores-Moreno, D Foudas, R Gazis, D Hibbett, P Kennedy, D Lindner, D Maynard, A Milo, R Nilsson, J Powell, M Schildhouer, J Schilling, JM Bhatnagar, and K Treseder. In revision. Fungal functional ecology: Bringing a trait-based approach to plant-associated fungi. Ecology Letters.

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