Publications

Peer-reviewed publications (also available through Google Scholar)

47. Caron S, SM Garvey, J Gewirtzman, K Schultz, JM Bhatnagar, C Driscoll, L Hutyra, and PH Templer. 2023. Urbanization and Fragmentation Have Opposite Effects on Soil Nitrogen Availability in Temperate Forest Ecosystems. Global Change Biology 00, 1– 16. DOI DOI 10.1111/gcb.16611

46. Silverstein, M, D Segrè, and JM Bhatnagar. 2023. Engineering microbial communities for the mitigation of global change. Global Change Biology 00: 1– 17. DOI 10.1111/gcb.16609

45. Policelli N, J Hoeksema, J Moyano, RJ Vilgalys, A Vivelo, JM Bhatnagar. 2022. Global pine tree invasions are linked to invasive root symbionts. New Phytologist 237: 16-21 DOI 10.1111/nph.18527

44. Sabat G, S Ahrendt, B Wu, J Gaskell, B Held, C Toapanta, T Vuong, A Lipzen, J Zhang, J Schilling, E Master, I Grigoriev, R Blanchette, D Hibbett, JM Bhatnagar, and D Cullen. 2022. Proteome of the wood decay fungus Fomitopsis pinicola is altered by substrate. Microbiology Resource Announcements 11(9):e0058622. DOI 10.1128/mra.00586-22

43. Vivelo A, B Alsairafi, JT Walsh, and JM Bhatnagar. 2022. Intrinsic growth rate and cellobiohydrolase activity underlie the phylogenetic signal to fungal decomposer succession. Fungal Ecology 61: 101180. DOI 10.1016/j.funeco.2022.101180

42. Finestone, J, PH Templer, and JM Bhatnagar. 2022. Soil fungi exposed to warming temperatures and shrinking snowpack in a northern hardwood forest have lower capacity for growth and nutrient cycling. Frontiers in Forests and Global Change. 5:800335. DOI 10.3389/ffgc.2022.800335

41. Averill CA, C Fortunel, DS Maynard, J van den Hoogen, MC Dietze, JM Bhatnagar, and TW Crowther. 2022. Alternative stable states of the forest mycobiome. Nature Ecology & Evolution 6: 375–382. DOI 10.1038/s41559-022-01663-9

40. Saifuddin M, R Phillips, JM Bhatnagar, and AC Finzi. 2021. Ectomycorrhizal fungi are associated with reduced nitrogen cycling rates in temperate forest soils without corresponding trends in bacterial functional groups. Oecologia 196 (3): 863-875. DOI 10.1007/s00442-021-04966-z

39. Iwata M, A Gutierrez, G Marques, G Sabat, PJ Kersten, D Cullen, JM Bhatnagar, J Yadav, A Lipzen, Y Yoshinaga, A Sharma, C Adam, C Daum, V Ng, IV Grigoriev, C Hori. 2021. Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives. Scientific Reports 11: 12528. DOI 10.1038/s41598-021-91756-5

38. Averill CA, ZR Werbin, KF Atherton, JM Bhatnagar, and MC Dietze. 2021. Soil microbiome predictability increases with spatial and taxonomic scale. Nature Ecology & Evolution 5: 747-756. DOI 10.1038/s41559-021-01445-9

37. Werbin ZR, B Hackos, MC Dietze, and JM Bhatnagar. 2021. The National Ecological Observatory Network’s soil metagenomes: assembly and basic analysis. F1000 Research 10: 299. DOI 10.12688/f1000research.51494.1

36. Stephen Nayfach, Simon Roux, Rekha Seshadri, Daniel Udwary, Neha Varghese, Frederik Schulz, Dongying Wu, David Paez-Espino, I-Min Chen, Marcel Huntemann, Krishna Palaniappan, Joshua Ladau, Supratim Mukherjee, T.B.K. Reddy, Torben Nielsen, Edward Kirton, José P. Faria, Janaka N. Edirisinghe, Christopher S. Henry, Sean P. Jungbluth, Dylan Chivian, Paramvir Dehal, Elisha M. Wood-Charlson, Adam P. Arkin, Susannah Tringe, Axel Visel, IMG/M Data Consortium, Tanja Woyke, Nigel J. Mouncey, Natalia N. Ivanova, Nikos C. Kyrpides, Emiley A. Eloe-Fadrosh1. 2020. A Genomic Catalogue of Earth’s Microbiomes. Nature Biotechnology 39: 499-509. DOI 10.1038/s41587-020-0718-6

35. Policelli N, TR Horton, AT Hudon, T Patterson, and JM Bhatnagar. 2020. Back to roots: the role of ectomycorrhizal fungi in forest restoration. Frontiers in Forests and Global Change 3: 97. DOI 10.3389/ffgc.2020.00097

34. Hoeksema, J, C Averill, JM Bhatnagar, E Brzostek, E Buscardo, K-H Chen, H-L Liao, L Nagy, N Policelli, J Ridgeway, and R Vilgalys. 2020. Ectomycorrhizal plant-fungal co-invasions as natural experiments for connecting plant and fungal traits to their ecosystem consequences. Frontiers in Forests And Global Change 3: 84. DOI 10.3389/ffgc.2020.00084

33. Van Nuland ME, DP Smith, JM Bhatnagar, A stefanski, SE Hobbie, PB Reich, and KG Peay. 2020. Warming and disturbance alter soil microbiome diversity and function in a northern forest ecotone. FEMS Microbiology Ecology 96(7): fiaa108. DOI 10.1093/femsec/fiaa108

32. Garcia MO, PH Templer, PO Sorensen, R Sanders-Demott, PM Groffman, and JM Bhatnagar. 2020. Soil microbes trade-off biogeochemical cycling for stress tolerance traits in response to year-round climate change. Frontiers in Microbiology 11:616. DOI 10.3389/fmicb.2020.00616

31. Steidinger B, JM Bhatnagar, R Vilgalys, J Taylor, TD Bruns, and KG Peay. 2020. Ectomycorrhizal fungal diversity predicted to substantially decline due to climate changes in North American Pinaceae forests. Journal of Biogeography 00:1– 11. DOI 10.1111/jbi.13802

30. Zanne A, K Abarenkov, M Afkhami, C Aguilar-Trigueros, S Bates, P Busby, N Christiansen, W Cornwell, T Crowther, H Flores-Moreno, D Foudas, R Gazis, D Hibbett, P Kennedy, D Lindner, D Maynard, A Milo, R Nilsson, J Powell, M Schildhouer, J Schilling, JM Bhatnagar, and K Treseder. 2019. Fungal functional ecology: Bringing a trait-based approach to plant-associated fungi. Biological Reviews.

29. Averill C, JM Bhatnagar, MC Dietze, WD Pearse, and SN Kivlin. 2019. Global imprint of plant mycorrhizal association on plant nutrient use efficiency traits. PNAS: 201906655. DO1 10.1073/pnas.1906655116.

28. Vivelo A and JM Bhatnagar. 2019. Meta-analysis of fungal succession during plant litter decay. FEMS Microbiology Ecology 95: fiz145. DOI 10.1093/femsec/fiz145

27. Saifuddin M, D Segré, JM Bhatnagar, and AC Finzi. 2019. Microbial carbon use efficiency predicted from genome-scale metabolic models. Nature Communications 10:3568. DOI 10.1038/s41467-019-11488-z

26. Sorensen PO, JM Bhatnagar, L Christianson, Jorge Duran, T Fahey, MC Fisk, AC Finzi, PM Groffman, JL Morse, and PH Templer. 2019. Roots mediate the Effects of Snowpack Decline on Soil Bacteria, Fungi, and Nitrogen Cycling in a Northern Hardwood Forest. Frontiers in Microbiology 10:926. DOI 10.3389/fmicb.2019.00926

25. Averill C, L Cates, MC Dietze, and JM Bhatnagar. 2019. Spatial vs. temporal controls over soil fungal community similarity at continental and global scales. ISME Journal 13, 2082–2093. DOI:10.1038/s41396-019-0420-1

24. Zak D, P Pellitier, W Argiroff, B Castillo, T James, L Nave, C Averill, K Beidler, JM Bhatnagar, Blesh, Jennifer; A Classen, M Craig, C Fernandez, P Gundersen, R Johansen, R Koide, E Lilleskov, B Lindahl, K  Nadelhoffer, R Phillips, A Tunlid. 2019. Exploring the function of ectomycorrhizal fungi in soil organic matter dynamics. New Phytologist 223:33-39. DOI:10.1111/nph.15679

23. Bhatnagar JM, Sabat, G, and D Cullen. 2019. The foliar endphyte Phialocephala scopiformis DAOMC 229536 proteome when grown on wood as sole carbon source. Microbiology Resource Announcements 8:e01280-18. DOI: 10.1128/MRA.01280-18

22. Hori C, J Gaskell, D Cullen, G Sabat, P Stewart, K Lail, Y Peng, K Barry, I Grigoriev, A Kohler, L Fauchery, F Martin, CA Zeiner, and JM Bhatnagar. 2018. Multi-omic analyses of extensively decayed Pinus contorta reveal expression of diverse array of lignocellulose degrading enzymes. Applied and Environmental Microbiology 84 (20) e01133-18. DOI: 10.1128/AEM.01133-18.

21. Averill C, MC Dietze, JM Bhatnagar. 2018. Continental‐scale nitrogen pollution is shifting forest mycorrhizal associations and soil carbon stocks. Global Change Biology 00 :1–10. DOI: 10.1111/gcb.14368.

20. Bhatnagar JM, KG Peay, KK Treseder. 2018. Litter chemistry influences decomposition through activity of specific microbial functional guilds. Ecological Monographs 88: 429-444. DOI: 10.1002/ecm.1303.

19. Ramirez KS, CG Knight, M de Hollander, FQ Brearley, B Constantinides, A Cotton, S Creer, TW Crowther, J Davison, M Delgado-Baquerizo, E Dorrepaal, DR Elliott, G Fox, RI Griffiths, C Hale, K Hartman, A Houlden, DL Jones, EJ Krab, FT Maestre, KL McGuire, S Monteux, CH Orr, WH van der Putten, IS Roberts, DA Robinson, JD Rocca, J Rowntree, K Schlaeppi, M Shepherd, BK Singh, AL Straathof, JM Bhatnagar, C Thion, MGA van der Heijden, FT de Vries. 2017. Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology 113: 285-293. DOI: 10.1038/s41564-017-0062-x

18. Siletti C, CA Zeiner, and JM Bhatnagar. 2017. Distributions of fungal melanin across species and soil. Soil Biology and Biochemistry 113: 285-293. DOI: 10.1016/j.soilbio.2017.05.030

17. Rosenthal L, S Branco, J Chung, S Glassman, H-L Liao, KG Peay, DP Smith, JM Talbot, JW Taylor, E Vellinga, R Vilgalys, TD Bruns. 2017. Survey of athelioid corticoid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal. Mycologia: 1-13. DOI: 10.1080/00275514.2017.1281677

16. Peay KG, PG Kennedy, JM Talbot. 2016. Dimensions of biodiversity in the Earth mycobiome. Nature Reviews Microbiology 14: 434-447. DOI: 10.1038/nrmicro.2016.59

15. Sinsabaugh RL, BL Turner, JM Talbot, BG Waring, JS Powers, CR Kuske, DL Moorhead, JJ Folstad Shah. 2016. Stoichiometry of microbial carbon use efficiency in soils. Ecological monographs 86(2): 172-189. DOI: 10.1890/15-2110.1

14. Talbot JM, F. Martin, A. Kohler, B. Henrissat, KG Peay. 2015. Functional guild predicts the enzymatic role of fungi in litter and soil biogeochemistry. Soil Biology and Biochemistry 88: 441-456. DOI: 10.1016/j.soilbio.2015.05.006

13. Glassman, S, KG Peay, JM Talbot, DP Smith, Judy Chung, JT Taylor, R Vilgalys, TD Bruns. 2015. A continental view of pine-associated ectomycorrhizal spore banks: a quiescent functional guild with a strong biogeographic pattern. New Phytologist 205: 1619-1631. DOI: 10.1111/nph.13240

12. Liao H-L, Y Chen, TD Bruns, KG Peay, JW Taylor, S Branco, JM Talbot, and R Vilgalys. 2014. Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with Piloderma-Pinus symbiosis: improved methodologies for assessing gene expression in situ. Environmental Microbiology 16: 3730-3742. DOI: 10.1111/1462-2920.12619

11. Huggins JA, JM Talbot, M Gardes, and PG Kennedy. 2014. Unlocking the environmental keys to host specificity: differential tolerance of acidity and nitrate by Alnus-associated ectomycorrhizal fungi. Fungal Ecology 12: 53-61. DOI: 10.1016/j.funeco.2014.04.003

10. Talbot JM, TD Bruns, JW Taylor, DP Smith, S Branco, SI Glassman, S Erlandson, R Vilgalys, H-L Liao, ME Smith, and KG Peay. 2014. Endemism and functional convergence across the North American soil mycobiome. Proceedings of the National Academy of Sciences 111: 6341-6346. DOI: 10.1073/pnas.1402584111

9. Talbot JM, S Erlandson, D Smith, S Glassman, R Vilgalys, T Bruns, J Taylor, M Smith, KG Peay. 2013. Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition. Soil Biology and Biochemistry. 57: 282-291. DOI: 10.1016/j.soilbio.2012.10.004

8. Talbot JM, KK Treseder. 2012. Interactions between lignin, cellulose, and N drive litter chemistry-decay relationships. Ecology. 93: 345-354 (Featured on journal cover). DOI: 10.1890/11-0843.1

7. Todd-Brown KEO, FM Hopkins, SN Kivlin, JM Talbot, SD Allison. 2012. A framework for representing microbial decomposition in coupled climate models. Biogeochemistry 109: 19-33. DOI: 10.1007/s10533-011-9635-6

6. Talbot JM, DJ Yelle, JS Nowick, KK Treseder. 2012. Litter decay rates are determined by lignin chemistry. Biogeochemistry 108: 279-295. DOI: 10.1007/s10533-011-9599-6

5. Talbot JM, KK Treseder. 2010. Controls over mycorrhizal uptake of organic N. Pedobiologia 53: 169-179. DOI: 10.1016/j.pedobi.2009.12.001

4. Gallet-Budynek A, E Brzostek, VL Rodgers, JM Talbot, S Hyzy, AC Finzi. 2009. Intact amino acid uptake by northern hardwood and conifer trees. Oecologia 160: 129-138. DOI: 10.1007/s00442-009-1284-2

3. Talbot JM, SD Allison, KK Treseder. 2008. Decomposers in disguise: Mycorrhizal fungi as regulators of soil carbon dynamics in ecosystems under global change. Functional Ecology 22: 955-963. DOI: 10.1111/j.1365-2435.2008.01402.x

2. Talbot JM, AC Finzi. 2008. Differential effects of sugar maple, red oak, and hemlock tannins on carbon and nitrogen cycling in temperate forest soils. Oecologia 155: 583–592. DOI: 10.1007/s00442-007-0940-7

1. Talbot JM, KD Kroger, A Rago, MC Allen, and MA Charette. 2003. Nitrogen Flux and Speciation Through the Subterranean Estuary of Waquoit Bay, Massachusetts. Biol. Bull. 205: 244-245. DOI: 10.2307/1543276

Book chapters

2. Policelli NP*, C VietoriszD, JM Bhatnagar, and MA Nuñez. 2022. Ectomycorrhizal fungi invasions in Southern South America. In: M.A. Lugo and M.C. Pagano (eds) Mycorrhizal Fungi in South America – Biodiversity, Conservation, and Sustainable Food Production, 2nd edition. Fungal Biology. Springer, Champ. DOI 10.1007/978-3-031-12994-0_2

1. Talbot JM. 2017. “Fungal Communities and Climate Change”. The fungal community: its organization and role in the ecosystem. Boca Raton: CRC.

Other publications

4. Søgaard Jørgensen, P, F Barraquand, V Bonhomme, TJ Curran, E Cieraad, T Ezard, L Gherardi, RA Hayes, T Poisot, R Salguero-Gómez, L DeSoto, B Swartz, JM Talbot, B Wee, N Zimmerman. 2015. Connecting people and ideas from around the world: global innovation platforms for next-generation ecology and beyond. Ecosphere 6: 1-11.

3. Talbot JM, KK Treseder. 2011. Dishing the dirt on carbon cycling. Nature Climate Change 1: 144-146.

2. Salguero-Gomez R, M Whiteside, JM Talbot. 2009. After “eco” comes “service”. Guest editorial in: Frontiers in Ecology and the Environment 7: 277-278.

1. Talbot JM, A Miller-Rushing. 2008. An era of opportunity for students. Guest editorial in: Frontiers in Ecology and the Environment 6: 59-59

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